Contents |  Index

Welcome
Getting Started
Overview of the Interface
The Button Box
Open
Fetch PDB
Clear
Help
Quit
The Presets Tab
Default View
Hetero Atoms View
Color By Chain View
Ball Stick View
Surface View
Polarity View
Aromatics View
Putty View
DNA RNA View
The Settings Tab
Stereo Viewing
Background Color
Color Space
PyMOL Interface
The Commands Tab
Select menu
Show/Hide Menu
Color menu
Manual Commands
The Movie Tab
Ligand Zoom
Build Protein
Highlight Chains
Rotate
The Information Tab
Protein Classification
Hetero Atoms
Primary Citation
Chains
Sequence Information
The Advanced Tab
Cartoon Settings
Sphere Settings
Stick Settings
Surface Settings
The Save Tab
Molecular Visualization Resources
Kinemage Resources
JMol Resources
Chime and Rasmol Resources
PyMOL Resources
Scripting in PyMOL
PyMOL Movies
PyMOL Online Community
PyMOL Tutorials
Python Resources